Collection of resources related to analyzing data in R and teaching/learning ecological topics. Some of these resources I have helped to build, while others are just links to resources that I have found super useful.

Multivariate analyses in R

tutorials_communityAnalyses (GitHub Repo)
Repository with code, notes, and links to learn how to use a variety of R packages for multivariate statistics, e.g. vegan, mvabund, boral

Reproducible Science

DataProcessing-BestPractices (GitHub Repo)
Materials on “best practices” for environmental research data management and code-sharing.

Data and code for publications

Lee_Hawkes_PhytobiomesJ (GitHub Repo)
Lee, M.R. & Hawkes, C.V. 2020. Plant and soil drivers of whole-plant microbiomes: variation in switchgrass fungi from coastal to mountain sites. Phytobiomes, 00: 1-11. DOI: 10.1094/PBIOMES-07-20-0056-FI

tyson_rotplot_microbes (GitHub Repo)
Lee, M.R., Oberle, B., Olivas, W., Young, D.F., Zanne, A.E. 2020. Wood construction more strongly shapes deadwood microbial communities than spatial location over five years of decay. Environmental Microbiology, 22(11): 4702-4717. DOI: 10.1111/1462-2920.15212

E8-NichePlots (GitHub Repo)
Lee, M.R., Flory, S.L., Phillips, R.P, Wright, J.P. 2018. Site conditions are more important than abundance for explaining plant invasion impacts on soil nitrogen cycling. Ecosphere, 9(10): e02454 DOI: 10.1002/ecs2.2454

MetaInvN (GitHub Repo)
Lee, M.R., Bernhardt, E.S., van Bodegom, P.M., Cornelissen, J.H.C., Kattge, J., Laughlin, D.C., Niinemets, U., Penuelas, J., Reich, P.B., Yguel, B., & Wright, J.P. 2016. Invasive species’ leaf traits and dissimilarity from natives shape their impact on nitrogen cycling: a meta-analysis. New Phytologist, 213(1): 128–139. DOI: 10.1111/nph.14115

AMFungiMv (GitHub Repo)
Lee, M.R., Tu, C., Chen, X., Hu, S. 2014. Arbuscular mycorrhizal fungi enhance P uptake and alter plant morphology in the invasive plant Microstegium vimineum. Biological Invasions, 16: 1083-1093. DOI: 10.1007/s10530-013-0562-4

NitrateMvFBs (GitHub Repo)
Lee, M.R., Flory, S.L, Phillips, R.P. 2012. Positive feedbacks to growth of an invasive grass through alteration of nitrogen cycling. Oecologia DOI: 10.1007/s00442-012-2309-9